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脑成像数据分析工具 FSL

FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. It runs on Apple and PCs (both Linux, and Windows via a Virtual Machine), and is very easy to install. Most of the tools can be run both from the command line and as GUIs (“point-and-click” graphical user interfaces). To quote the relevant references for FSL tools you should look in the individual tools’ manual pages, and also please reference one or more of the FSL overview papers:

1. M.W. Woolrich, S. Jbabdi, B. Patenaude, M. Chappell, S. Makni, T. Behrens, C. Beckmann, M. Jenkinson, S.M. Smith. Bayesian analysis of neuroimaging data in FSL. NeuroImage, 45:S173-86, 2009
2. S.M. Smith, M. Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens, H. Johansen-Berg, P.R. Bannister, M. De Luca, I. Drobnjak, D.E. Flitney, R. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. De Stefano, J.M. Brady, and P.M. Matthews. Advances in functional and structural MR image analysis and implementation as FSL. NeuroImage, 23(S1):208-19, 2004
3. M. Jenkinson, C.F. Beckmann, T.E. Behrens, M.W. Woolrich, S.M. Smith. FSL. NeuroImage, 62:782-90, 2012

Overview of FSL tools

Functional MRI: FEAT, MELODIC, FABBER, BASIL, VERBENA
Structural MRI: BET, FAST, FIRST, FLIRT & FNIRT, FSLVBM, SIENA & SIENAX, MIST, BIANCA, MSM, fsl_anat
Diffusion MRI: FDT, TBSS, eddy, topup
GLM / Stats: GLM general advice, Randomise, Cluster, FDR, Dual Regression, Mm, FLOBS
Other: FSLeyes, FSLView, Fslutils, Atlases, Atlasquery, SUSAN, FUGUE, MCFLIRT, Miscvis, POSSUM, BayCEST

官方网站:https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FSL

下载地址

获取官方下载地址:https://fsl.fmrib.ox.ac.uk/fsldownloads_registration
WIndows:https://fsl.fmrib.ox.ac.uk/fsldownloads/FSLVm7_64.zip
macOS:https://fsl.fmrib.ox.ac.uk/fsldownloads/fslinstaller.py
Linux:CentOS/Debian/Ubuntu,请前往官方地址获取

安装指南
在Windows系统下需要使用VMware虚拟机导入,在虚拟机中运行,(Instructions for Windows 10)
macOS系统通过命令安装(Instructions for macOS – 10.12 Sierra)
Linux安装指南(Instructions for Linux)

 

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